How to Visualize Proteins in Jupyter Notebook
Learn how to use OpenAD to visualize proteins and other macromolecules from:
- FASTA strings
- PDB or CIF files
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How to Use the Molecule Working Set
Your molecule working set (MWS) is an in-memory list of small molecules that is the subject of your calculations and manipulations.
Visualizing Molecules in Jupyter Notebook from a List or DataFrame
Learn how to use OpenAD in Juptyter Notebook to visualize a list of SMILES or InChI strings.
How to Visualize SDF files and Other Molecular File Formats
Learn how to use OpenAD to visualize the contents of different molecular file formats in a convenient molecule grid.
Supported file formats are SDF, CSV, SMI and MOL.
How to Visualize a Molecule in Jupyter Notebook
Learn how to use OpenAD to visualize a molecule in 2D and 3D from a SMILES, InChI, InChIKey, name or PubChem ID.